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3a4935d21b
* 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Update with new versions.yml file * 🐛 FIX: Update meta.yml + correct typos * Update modules/bamtools/split/meta.yml Add bam, split, chunk tags Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * 🐛 FIX: Correct meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: bamtools_split
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description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
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keywords:
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- bamtools
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- bamtools/split
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- bam
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- split
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- chunk
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tools:
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- bamtools:
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description: C++ API & command-line toolkit for working with BAM data
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homepage: http://github.com/pezmaster31/bamtools
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documentation: https://github.com/pezmaster31/bamtools/wiki
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tool_dev_url: http://github.com/pezmaster31/bamtools
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: A BAM file to split
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pattern: "*.bam"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: Several Bam files
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pattern: "*.bam"
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authors:
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- "@sguizard"
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