nf-core_modules/modules/dshbio/exportsegments/meta.yml
Michael L Heuer c9587d76e2
Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format (#1207)
* Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format

* fix ci failures

Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
2022-01-17 09:24:40 +00:00

41 lines
1.3 KiB
YAML

name: dshbio_exportsegments
description: Export assembly segment sequences in GFA 1.0 format to FASTA format
keywords:
- gfa
- assembly
- segment
tools:
- dshbio:
description: |
Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
or later.
homepage: https://github.com/heuermh/dishevelled-bio
documentation: https://github.com/heuermh/dishevelled-bio
licence: ['LGPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gfa:
type: file
description: Assembly segments in uncompressed or compressed GFA 1.0 format
pattern: "*.{gfa|gfa.bgz|gfa.gz|gfa.zst}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Assembly segment sequences in gzipped FASTA format
pattern: "*.{fa.gz}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@heuermh"