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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: seqwish_induce
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description: Induce a variation graph in GFA format from alignments in PAF format
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keywords:
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- induce
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- paf
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- gfa
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- graph
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- variation graph
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tools:
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- seqwish:
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description: |
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seqwish implements a lossless conversion from pairwise alignments between
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sequences to a variation graph encoding the sequences and their alignments.
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homepage: https://github.com/ekg/seqwish
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documentation: https://github.com/ekg/seqwish
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- paf:
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type: file
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description: PAF file of alignments
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pattern: "*.{paf,paf.gz}"
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- fasta:
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type: file
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description: FASTA file used to generate alignments
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pattern: "*.{fa,fa.gz,fasta,fasta.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Variation graph in GFA 1.0 format
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pattern: "*.{gfa}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@heuermh"
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