mirror of
https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
55 lines
2.3 KiB
YAML
55 lines
2.3 KiB
YAML
- name: hisat2 align test_hisat2_align_single_end
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command: nextflow run tests/software/hisat2/align -entry test_hisat2_align_single_end -c tests/config/nextflow.config
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tags:
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- hisat2
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- hisat2/align
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files:
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- path: output/hisat2/test.hisat2.summary.log
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md5sum: 7b8a9e61b7646da1089b041333c41a87
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- path: output/hisat2/genome.splice_sites.txt
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/hisat2/test.bam
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- path: output/index/hisat2/genome.5.ht2
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md5sum: 91198831aaba993acac1734138c5f173
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- path: output/index/hisat2/genome.7.ht2
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md5sum: 9013eccd91ad614d7893c739275a394f
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- path: output/index/hisat2/genome.1.ht2
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md5sum: 3ea3dc41304941ad8d047e4d71b4899e
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- path: output/index/hisat2/genome.2.ht2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: output/index/hisat2/genome.6.ht2
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md5sum: 265e1284ce85686516fae5d35540994a
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- path: output/index/hisat2/genome.3.ht2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: output/index/hisat2/genome.8.ht2
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md5sum: 33cdeccccebe80329f1fdbee7f5874cb
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- path: output/index/hisat2/genome.4.ht2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- name: hisat2 align test_hisat2_align_paired_end
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command: nextflow run tests/software/hisat2/align -entry test_hisat2_align_paired_end -c tests/config/nextflow.config
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tags:
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- hisat2
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- hisat2/align
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files:
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- path: output/hisat2/test.hisat2.summary.log
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md5sum: 9839b31db795958cc4b70711a3414e9c
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- path: output/hisat2/genome.splice_sites.txt
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/hisat2/test.bam
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- path: output/index/hisat2/genome.5.ht2
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md5sum: 91198831aaba993acac1734138c5f173
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- path: output/index/hisat2/genome.7.ht2
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md5sum: 9013eccd91ad614d7893c739275a394f
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- path: output/index/hisat2/genome.1.ht2
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md5sum: 3ea3dc41304941ad8d047e4d71b4899e
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- path: output/index/hisat2/genome.2.ht2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: output/index/hisat2/genome.6.ht2
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md5sum: 265e1284ce85686516fae5d35540994a
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- path: output/index/hisat2/genome.3.ht2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: output/index/hisat2/genome.8.ht2
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md5sum: 33cdeccccebe80329f1fdbee7f5874cb
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- path: output/index/hisat2/genome.4.ht2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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