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2ed9b6ae28
* new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
28 lines
785 B
Text
28 lines
785 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--model GTR+G'] )
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include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--model GTR+G --bs-trees 1000'] )
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/*
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* Test without bootstrapping
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*/
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workflow test_raxmlng_no_bootstrap {
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input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
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RAXMLNG_NO_BOOTSTRAP ( input )
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}
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/*
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* Test with bootstrapping
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*/
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workflow test_raxmlng_bootstrap {
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input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
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RAXMLNG_BOOTSTRAP ( input )
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}
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