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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
22 lines
1,010 B
YAML
22 lines
1,010 B
YAML
## TODO nf-core: Please run the following command to build this file:
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# nf-core modules create-test-yml strelka/germline
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- name: strelka germline
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command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/strelka_test_variants.vcf.gz
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- path: output/strelka/strelka_test_variants.vcf.gz.tbi
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- path: output/strelka/strelka_test_genome.vcf.gz
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- path: output/strelka/strelka_test_genome.vcf.gz.tbi
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- name: strelka germline target bed
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command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/strelka_test_variants.vcf.gz
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- path: output/strelka/strelka_test_variants.vcf.gz.tbi
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- path: output/strelka/strelka_test_genome.vcf.gz
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- path: output/strelka/strelka_test_genome.vcf.gz.tbi
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