mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 08:12:03 +00:00
a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
22 lines
1,010 B
YAML
22 lines
1,010 B
YAML
## TODO nf-core: Please run the following command to build this file:
|
|
# nf-core modules create-test-yml strelka/germline
|
|
- name: strelka germline
|
|
command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/strelka_test_variants.vcf.gz
|
|
- path: output/strelka/strelka_test_variants.vcf.gz.tbi
|
|
- path: output/strelka/strelka_test_genome.vcf.gz
|
|
- path: output/strelka/strelka_test_genome.vcf.gz.tbi
|
|
- name: strelka germline target bed
|
|
command: nextflow run ./tests/software/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/strelka_test_variants.vcf.gz
|
|
- path: output/strelka/strelka_test_variants.vcf.gz.tbi
|
|
- path: output/strelka/strelka_test_genome.vcf.gz
|
|
- path: output/strelka/strelka_test_genome.vcf.gz.tbi
|