nf-core_modules/.github/workflows/samtools_index.yml
2020-12-09 09:56:40 -06:00

40 lines
976 B
YAML

name: samtools_index
on:
push:
paths:
- software/samtools/index/**
- .github/workflows/samtools_index.yml
- tests/software/samtools/**
pull_request:
paths:
- software/samtools/index/**
- .github/workflows/samtools_index.yml
- tests/software/samtools/**
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.07.1, ""]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag samtools_index --symlink --wt 2