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https://github.com/MillironX/nf-core_modules.git
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44 lines
1.8 KiB
YAML
44 lines
1.8 KiB
YAML
- name: "sratools ncbisettings test_sratools_ncbisettings_with_good_existing"
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command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_good_existing -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow_mount.config
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tags:
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- "sratools"
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- "sratools/ncbisettings"
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files:
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- path: "output/sratools/user-settings.mkfg"
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md5sum: 955e27aff2c277c2f1f0943a098888c1
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- path: output/sratools/versions.yml
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contains:
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- "sratools: 2.11.0"
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- name: "sratools ncbisettings test_sratools_ncbisettings_with_bad_existing"
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command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_bad_existing -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow_mount.config
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tags:
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- "sratools"
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- "sratools/ncbisettings"
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exit_code: 1
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stdout:
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contains:
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- "Command error:"
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- "missing the required entries"
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- "/LIBS/GUID"
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- "/libs/cloud/report_instance_identity"
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- "Feel free to add the following"
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files:
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- path: "output/sratools/user-settings.mkfg"
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should_exist: false
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- path: output/sratools/versions.yml
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should_exist: false
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- name: "sratools ncbisettings test_sratools_ncbisettings_with_nonexisting"
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command: nextflow run ./tests/modules/sratools/ncbisettings -entry test_sratools_ncbisettings_with_nonexisting -c ./tests/config/nextflow.config -c ./tests/modules/sratools/ncbisettings/nextflow.config
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tags:
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- "sratools"
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- "sratools/ncbisettings"
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files:
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- path: "output/sratools/user-settings.mkfg"
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contains:
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- "/LIBS/GUID"
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- "/libs/cloud/report_instance_identity"
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- path: output/sratools/versions.yml
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contains:
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- "sratools: 2.11.0"
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