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0b0f87c2f7
* add module main porechop * update porechop main * add porechop functions * update meta porechop * add test main porechop * add porechop pytest yml * add porechop test.yml * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * re-add porechop avoid conflict * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * fix prefix suffix Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
50 lines
1.2 KiB
YAML
50 lines
1.2 KiB
YAML
name: porechop
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description: Adapter removal and demultiplexing of Oxford Nanopore reads
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keywords:
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- adapter
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- nanopore
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- demultiplexing
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tools:
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- porechop:
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description: Adapter removal and demultiplexing of Oxford Nanopore reads
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homepage: "https://github.com/rrwick/Porechop"
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documentation: "https://github.com/rrwick/Porechop"
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tool_dev_url: "https://github.com/rrwick/Porechop"
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doi: "10.1099/mgen.0.000132"
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: fastq/fastq.gz file
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pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- reads:
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type: file
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description: Demultiplexed and/or adapter-trimmed fastq.gz file
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pattern: "*.{fastq.gz}"
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authors:
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- "@ggabernet"
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- "@jasmezz"
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- "@d4straub"
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- "@LaurenceKuhl"
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- "@SusiJo"
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- "@jonasscheid"
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- "@jonoave"
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- "@GokceOGUZ"
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