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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
36 lines
1.8 KiB
YAML
36 lines
1.8 KiB
YAML
- name: damageprofiler
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command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler -c tests/config/nextflow.config -dump-channels
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tags:
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- damageprofiler
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files:
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- path: output/damageprofiler/test/3p_freq_misincorporations.txt
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md5sum: da4cac90c78899a7cb6d72d415392b49
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- path: output/damageprofiler/test/3pGtoA_freq.txt
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md5sum: 8dab75d51a4b943b501d0995169c767f
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- path: output/damageprofiler/test/5pCtoT_freq.txt
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md5sum: fcc48ee5f72edff930d627c8bfdd8a5b
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- path: output/damageprofiler/test/5p_freq_misincorporations.txt
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md5sum: 54665474f5ef17dcc268567e5eaa7d86
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- path: output/damageprofiler/test/DamagePlot_five_prime.svg
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- path: output/damageprofiler/test/DamagePlot.pdf
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- path: output/damageprofiler/test/DamagePlot_three_prime.svg
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- path: output/damageprofiler/test/DamageProfiler.log
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contains:
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- "FINISHED SUCCESSFULLY"
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- path: output/damageprofiler/test/dmgprof.json
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md5sum: 98499024c7e937896e481f2d3cfbdd3e
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- path: output/damageprofiler/test/DNA_comp_genome.txt
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md5sum: f91e70760d91a1193a27e360aaddf2fd
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- path: output/damageprofiler/test/DNA_composition_sample.txt
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md5sum: 1257eb3eb42484647bfba2151f9ef04f
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- path: output/damageprofiler/test/edit_distance.pdf
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- path: output/damageprofiler/test/edit_distance.svg
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- path: output/damageprofiler/test/editDistance.txt
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md5sum: af2d2f4a99058ec56eae88ec27779e38
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- path: output/damageprofiler/test/Length_plot_combined_data.svg
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- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
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- path: output/damageprofiler/test/Length_plot.pdf
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- path: output/damageprofiler/test/lgdistribution.txt
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md5sum: c5d029bf3a92b613310ee23f47d94981
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- path: output/damageprofiler/test/misincorporation.txt
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md5sum: 3aa6dd749010a492d92a815a83c196a8
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