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https://github.com/MillironX/nf-core_modules.git
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572abb00b3
* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
16 lines
530 B
YAML
16 lines
530 B
YAML
- name: Run bwameth single-end test workflow
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command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
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tags:
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- bwameth
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- bwameth_align
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files:
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- path: output/test_single_end/test.bam
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- name: Run bwameth paired-end test workflow
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command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
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tags:
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- bwameth
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- bwameth_align
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files:
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- path: output/test_paired_end/test.bam
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