mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
25 lines
898 B
Text
25 lines
898 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { QUAST } from '../../../software/quast/main.nf' addParams(options: [:])
|
|
|
|
workflow test_quast_ref {
|
|
fasta = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
|
|
gff = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.gtf", checkIfExists: true)
|
|
consensus = file("${launchDir}/tests/data/genomics/sarscov2/genome/transcriptome.fasta", checkIfExists: true)
|
|
use_fasta = true
|
|
use_gtf = true
|
|
|
|
QUAST ( consensus, fasta, gff, use_fasta, use_gtf )
|
|
}
|
|
|
|
workflow test_quast_noref {
|
|
fasta = file('fasta_dummy')
|
|
gff = file('gff_dummy')
|
|
consensus = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
|
|
use_fasta = false
|
|
use_gtf = false
|
|
|
|
QUAST ( consensus, fasta, gff, use_fasta, use_gtf )
|
|
}
|