Mark-S-Hill 889465cb2b update test data paths (#373) ... * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-03-24 18:14:11 +00:00
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applybqsr	Add gatk4/applybqsr (#331)	2021-03-23 14:15:26 +01:00
baserecalibrator	Add gatk4/baserecalibrator (#327)	2021-03-23 18:32:37 +01:00
bedtointervallist	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
createsequencedictionary	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
fastqtosam	add gatk4/fastqtosam #198 (#311)	2021-03-22 18:26:02 +00:00
mergebamalignment	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
mergevcfs	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
revertsam	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
samtofastq	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
splitncigarreads	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
variantfiltration	update test data paths (#373)	2021-03-24 18:14:11 +00:00