mirror of
https://github.com/MillironX/nf-core_modules.git
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53109d53c0
* Inital nf-core create * remove TODO comments, input and output files defined * add get version in script * added flow control for single/paired end data * added script main commands * removed completed TODO messages * removed completed TODO messages * added software info * added input reads description * added output description * added description and keywords * added single end test * added paired end test * fixed sample name flag * fixed reverse read variable * added test yaml * update for pytest_software * order in pytest_software was different * replaced functions.nf with copy from another module * simplify read command line Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
19 lines
707 B
YAML
19 lines
707 B
YAML
- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
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command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config
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tags:
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- gatk4_fastqtosam_single_end
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- gatk4_fastqtosam
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- gatk4
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
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command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config
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tags:
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- gatk4_fastqtosam_paired_end
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- gatk4_fastqtosam
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- gatk4
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files:
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- path: output/gatk4/test.bam
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md5sum: 4967100b2e4912c0e4ce0976d946bafb
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