mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
26 lines
1.1 KiB
Text
26 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GATK4_MERGEVCFS } from '../../../../software/gatk4/mergevcfs/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_gatk4_mergevcfs {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/vcf/test.vcf", checkIfExists: true),
|
|
file("${launchDir}/tests/data/genomics/sarscov2/illumina/vcf/test2.vcf", checkIfExists: true) ]
|
|
]
|
|
dict = file('tests/data/genomics/sarscov2/genome/genome.dict', checkIfExists: true)
|
|
|
|
GATK4_MERGEVCFS ( input, dict, false )
|
|
}
|
|
|
|
workflow test_gatk4_mergevcfs_refdict {
|
|
def input = []
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/vcf/test.vcf", checkIfExists: true),
|
|
file("${launchDir}/tests/data/genomics/sarscov2/illumina/vcf/test2.vcf", checkIfExists: true) ]
|
|
]
|
|
dict = file('tests/data/genomics/sarscov2/genome/genome.dict', checkIfExists: true)
|
|
|
|
GATK4_MERGEVCFS ( input, ref_dict, true )
|
|
}
|