nf-core_modules/tests/software/gatk4/splitncigarreads/main.nf
Harshil Patel acb1a12a56
Re-organise all test data (#354)
* Re-organise all test data

* Fix ECLint

* Fix ECLint agaaainn

* Now is not the time EClint
2021-03-24 09:53:41 +00:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { GATK4_SPLITNCIGARREADS } from '../../../../software/gatk4/splitncigarreads/main.nf' addParams( options: [:] )
workflow test_gatk4_splitncigarreads {
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.bam", checkIfExists: true)]
]
fasta = [ file("tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true),
file("tests/data/genomics/sarscov2/genome/genome.fasta.fai", checkIfExists: true),
file("tests/data/genomics/sarscov2/genome/genome.dict", checkIfExists: true)
]
GATK4_SPLITNCIGARREADS ( input, fasta )
}