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36 lines
1.1 KiB
Text
36 lines
1.1 KiB
Text
process DEEPTOOLS_PLOTPROFILE {
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tag "$meta.id"
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label 'process_low'
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conda (params.enable_conda ? 'bioconda::deeptools=3.5.1' : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/deeptools:3.5.1--py_0' :
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'quay.io/biocontainers/deeptools:3.5.1--py_0' }"
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input:
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tuple val(meta), path(matrix)
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output:
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tuple val(meta), path("*.pdf"), emit: pdf
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tuple val(meta), path("*.tab"), emit: table
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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plotProfile \\
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$args \\
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--matrixFile $matrix \\
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--outFileName ${prefix}.plotProfile.pdf \\
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--outFileNameData ${prefix}.plotProfile.tab
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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deeptools: \$(plotProfile --version | sed -e "s/plotProfile //g")
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END_VERSIONS
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"""
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}
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