mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
27 lines
760 B
Text
27 lines
760 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ENSEMBLVEP } from '../../../modules/ensemblvep/main.nf'
|
|
|
|
workflow test_ensemblvep_fasta {
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
|
|
ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [], fasta, [] )
|
|
}
|
|
|
|
workflow test_ensemblvep_no_fasta {
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = []
|
|
|
|
ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [], fasta, [] )
|
|
}
|