nf-core_modules/tests/modules/mtnucratio/main.nf
louperelo a4943a9e57
Mtnucratio (#986)
* add new module samtools_depth

* fixed main.nf for samtools/depth

* add new module mtnucratio

* fix main.nf

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* layout in main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-10-29 15:02:02 +02:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { MTNUCRATIO } from '../../../modules/mtnucratio/main.nf' addParams( options: [:] )
workflow test_mtnucratio {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true)]
mt_id = 'mt_id'
MTNUCRATIO ( input, mt_id )
}