Simon Pearce 81d65d4978 Samtools fixmate module (#991) ... * Samtools fixmate module * Update modules/samtools/fixmate/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update main.nf * Update modules/samtools/fixmate/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update meta.yml Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>		2021-11-01 12:12:14 +00:00
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ampliconclip	Add samtools ampliconclip (#590)	2021-07-20 21:31:31 +01:00
bam2fq	Bam2fq (#958)	2021-10-29 10:46:34 +02:00
depth	add new module samtools/depth (#950)	2021-10-28 12:53:21 +02:00
faidx	Fix version commands (#749)	2021-09-27 22:10:37 +01:00
fastq	nf-core modules bump-versions for all modules (#630)	2021-07-28 09:10:44 +01:00
fixmate	Samtools fixmate module (#991)	2021-11-01 12:12:14 +00:00
flagstat	nf-core modules bump-versions for all modules (#630)	2021-07-28 09:10:44 +01:00
idxstats	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
index	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
merge	Update to allow cram + update needed to use the gatk4 modules in sarek (#976)	2021-10-29 13:01:05 +02:00
mpileup	nf-core modules bump-versions for all modules (#630)	2021-07-28 09:10:44 +01:00
sort	Subworkflow Infrastructure (#662)	2021-10-08 16:02:42 +01:00
stats	Update to allow cram + update needed to use the gatk4 modules in sarek (#976)	2021-10-29 13:01:05 +02:00
view	Update to allow cram + update needed to use the gatk4 modules in sarek (#976)	2021-10-29 13:01:05 +02:00