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cac6dc83bb
* hmmcopy gccounter working * Update modules/hmmcopy/gccounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> * Update main.nf Changed version to 0.1.1 as the container says Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
33 lines
938 B
YAML
33 lines
938 B
YAML
name: hmmcopy_gccounter
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description: gcCounter function from HMMcopy utilities, used to generate GC content in non-overlapping windows from a fasta reference
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keywords:
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- hmmcopy
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- gccounter
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- cnv
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tools:
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- hmmcopy:
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description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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homepage: https://github.com/shahcompbio/hmmcopy_utils
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documentation: https://github.com/shahcompbio/hmmcopy_utils
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tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
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doi: ""
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licence: ['GPL v3']
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- wig:
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type: file
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description: wig file containing gc content of each window of the genome
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pattern: "*.{gc.wig}"
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authors:
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- "@sppearce"
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