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30e64becaa
* add meta info * updated meta.yml * Apply suggestions from code review * Update test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
35 lines
960 B
Text
35 lines
960 B
Text
def VERSION = '377' // Version information not provided by tool on CLI
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process UCSC_WIGTOBIGWIG {
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tag "$meta.id"
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label 'process_medium'
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conda (params.enable_conda ? "bioconda::ucsc-wigtobigwig=377" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/ucsc-wigtobigwig:377--h0b8a92a_2' :
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'quay.io/biocontainers/ucsc-wigtobigwig:377--h0b8a92a_2' }"
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input:
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tuple val(meta), path(wig)
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path sizes
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output:
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tuple val(meta), path("*.bw"), emit: bw
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path "versions.yml" , emit: versions
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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wigToBigWig \\
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$args \\
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$wig \\
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$sizes \\
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${prefix}.bw
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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ucsc: $VERSION
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END_VERSIONS
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"""
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}
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