mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: artic_guppyplex
|
|
description: Aggregates fastq files with demultiplexed reads
|
|
keywords:
|
|
- artic
|
|
- aggregate
|
|
- demultiplexed reads
|
|
tools:
|
|
- artic:
|
|
description: ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
|
|
homepage: https://artic.readthedocs.io/en/latest/
|
|
documentation: https://artic.readthedocs.io/en/latest/
|
|
tool_dev_url: https://github.com/artic-network/fieldbioinformatics
|
|
doi: ""
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq_dir:
|
|
type: directory
|
|
description: Directory containing the fastq files with demultiplexed reads
|
|
pattern: "*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq:
|
|
type: file
|
|
description: Aggregated FastQ files
|
|
pattern: "*.{fastq.gz}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|