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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: cooler_dump
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description: Dump a cooler’s data to a text stream.
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keywords:
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- dump
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tools:
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- cooler:
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description: Sparse binary format for genomic interaction matrices
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homepage: https://cooler.readthedocs.io/en/latest/index.html
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documentation: https://cooler.readthedocs.io/en/latest/index.html
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tool_dev_url: https://github.com/open2c/cooler
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doi: "10.1093/bioinformatics/btz540"
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licence: ["BSD-3-Clause"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- cool:
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type: file
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description: Path to COOL file
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pattern: "*.{cool,mcool}"
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- resolution:
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type: value
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description: Resolution
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bedpe:
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type: file
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description: Output text file
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pattern: "*.bedpe"
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authors:
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- "@jianhong"
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