nf-core_modules/modules/pbccs/meta.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

67 lines
1.7 KiB
YAML

name: pbccs
description: Pacbio ccs - Generate Higly Accurate Single-Molecule Consensus Reads
keywords:
- ccs
tools:
- pbccs:
description: pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
homepage: https://github.com/PacificBiosciences/pbbioconda
documentation: https://ccs.how/
tool_dev_url: https://github.com/PacificBiosciences/ccs
doi: ""
licence: ["BSD-3-Clause-Clear"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
id: id of the split file
- bam:
type: file
description: Raw subreads bam
pattern: "*.subreads.bam"
- pbi:
type: file
description: Pacbio BAM Index
pattern: "*.pbi"
- chunk_num:
-type: integer
-description: BAM part to process
- chunk_on:
-type: integer
-description: Total number of bam parts to process
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bam:
type: file
description: CCS sequences in bam format
pattern: "*.bam"
- pbi:
type: file
description: PacBio Index of CCS sequences
pattern: "*.pbi"
- report_txt:
type: file
description: Summary of CCS in txt format
pattern: ".txt"
- report_json:
type: file
description: Summary of CCS in txt json
pattern: ".json"
- metrics:
type: file
description: Metrics about zmws
pattern: "*.json.gz"
authors:
- "@sguizard"