mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1,008 B
YAML
39 lines
1,008 B
YAML
name: seqkit_split2
|
|
description: Split single or paired-end fastq.gz files
|
|
keywords:
|
|
- split
|
|
- fastq
|
|
tools:
|
|
- seqkit:
|
|
description: |
|
|
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
|
|
homepage: https://github.com/shenwei356/seqkit
|
|
documentation: https://bioinf.shenwei.me/seqkit/
|
|
doi: 10.1371/journal.pone.0163962
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: FastQ files
|
|
pattern: "*.{fq.gz/fastq.gz}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: Split fastq files
|
|
pattern: "*.{fq.gz/fastq.gz}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@FriederikeHanssen"
|