mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-20 23:32:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: seqwish_induce
|
|
description: Induce a variation graph in GFA format from alignments in PAF format
|
|
keywords:
|
|
- induce
|
|
- paf
|
|
- gfa
|
|
- graph
|
|
- variation graph
|
|
tools:
|
|
- seqwish:
|
|
description: |
|
|
seqwish implements a lossless conversion from pairwise alignments between
|
|
sequences to a variation graph encoding the sequences and their alignments.
|
|
homepage: https://github.com/ekg/seqwish
|
|
documentation: https://github.com/ekg/seqwish
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- paf:
|
|
type: file
|
|
description: PAF file of alignments
|
|
pattern: "*.{paf,paf.gz}"
|
|
- fasta:
|
|
type: file
|
|
description: FASTA file used to generate alignments
|
|
pattern: "*.{fa,fa.gz,fasta,fasta.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- gfa:
|
|
type: file
|
|
description: Variation graph in GFA 1.0 format
|
|
pattern: "*.{gfa}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@heuermh"
|