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5e7b1ef9a5
use process_single Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
35 lines
1.1 KiB
Text
35 lines
1.1 KiB
Text
process UNZIP {
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tag "$archive"
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label 'process_single'
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conda (params.enable_conda ? "bioconda::p7zip=15.09" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/p7zip:15.09--h2d50403_4' :
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'quay.io/biocontainers/p7zip:15.09--h2d50403_4' }"
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input:
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tuple val(meta), path(archive)
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output:
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tuple val(meta), path("${archive.baseName}/"), emit: unzipped_archive
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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if ( archive instanceof List && archive.name.size > 1 ) { exit 1, "[UNZIP] error: 7za only accepts a single archive as input. Please check module input." }
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"""
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7za \\
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e \\
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-o"${archive.baseName}"/ \\
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$args \\
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$archive
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
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END_VERSIONS
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"""
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}
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