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nf-core_modules/tests/modules/fastp
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Adam Talbot 7e8ad56688
module FASTP: Support for interleaved FASTQ (#1891) 
* 1882 FASTP now supports interleaved FASTQ files

Changes:
 - single_end FASTP pipes the FASTQ file
 - Using args, it can be configured for interleaved in `--interleaved_in`
 - Out is automatically interleaved if input is paired end.
 - Removed md5sum checks for FASTQ files as compression seemed to cause
 differences
 - Instead, we check inside the FASTQ files for content.

Relates to #1882

Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-07-19 16:27:15 +01:00
..
main.nf module FASTP: Support for interleaved FASTQ (#1891) 2022-07-19 16:27:15 +01:00
nextflow.config module FASTP: Support for interleaved FASTQ (#1891) 2022-07-19 16:27:15 +01:00
test.yml module FASTP: Support for interleaved FASTQ (#1891) 2022-07-19 16:27:15 +01:00