mirror of
https://github.com/MillironX/nf-core_modules.git
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e726b1730d
* MD finally supports cram output * publish crai file * fix test output * fix mv * figure out if contains breaks stuff * remove variable checksum * add contains check * remove variable checksum Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
40 lines
1.6 KiB
YAML
40 lines
1.6 KiB
YAML
- name: gatk4 markduplicates test_gatk4_markduplicates
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command: nextflow run ./tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicates
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files:
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- path: output/gatk4/test.bai
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md5sum: 4ac375b5288501c832bc3e4773f06d39
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- path: output/gatk4/test.bam
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md5sum: c1a0d25c5f65514e72aa490326557a88
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- path: output/gatk4/test.bam.metrics
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- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
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command: nextflow run ./tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicates
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files:
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- path: output/gatk4/test.bai
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md5sum: 832fbc6b3c3266d024fc7131ffd1b45d
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- path: output/gatk4/test.bam
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md5sum: 36909e80bde1aa547fae6382fd35764d
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- path: output/gatk4/test.bam.metrics
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contains:
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- "testN"
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- "2820"
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- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_cram_output
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command: nextflow run ./tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_cram_output -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicates
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files:
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- path: output/gatk4/test.cram
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- path: output/gatk4/test.cram.crai
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md5sum: 53a329f0828210e317ad81b0e6ca4bc5
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- path: output/gatk4/test.cram.metrics
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contains:
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- "testN"
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- "2820"
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