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41 lines
2 KiB
YAML
41 lines
2 KiB
YAML
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark
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command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicatesspark
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files:
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- path: output/gatk4/test.bam
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md5sum: dc1a09ac6371aab7c50d1a554baa06d3
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- path: output/gatk4/versions.yml
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- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams
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command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicatesspark
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files:
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- path: output/gatk4/test.bam
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md5sum: 898cb0a6616897d8ada90bab53bf0837
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- path: output/gatk4/versions.yml
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- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_cram_out
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command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_cram_out -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicatesspark
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files:
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- path: output/gatk4/test.cram
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md5sum: 2271016de5e4199736598f39d12d7587
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- path: output/gatk4/versions.yml
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- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_metrics
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command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_metrics -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicatesspark
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files:
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- path: output/gatk4/test.bam
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md5sum: 898cb0a6616897d8ada90bab53bf0837
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- path: output/gatk4/test.metrics
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contains: ["## METRICS CLASS", "org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics"]
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- path: output/gatk4/versions.yml
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