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16 lines
570 B
Text
16 lines
570 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_CONSENSUS } from '../../../../software/bcftools/consensus/main.nf' addParams( options: [:] )
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workflow test_bcftools_consensus {
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def input = []
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input = [ [ id:'test' ], // meta map
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[ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ],
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[ file("${launchDir}/tests/data/vcf/test.vcf.gz.tbi", checkIfExists: true) ],
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[ file("${launchDir}/tests/data/vcf/test.consensus.fa", checkIfExists: true) ] ]
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BCFTOOLS_CONSENSUS ( input )
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}
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