mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: hmmer_hmmalign
|
|
description: hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
|
|
keywords:
|
|
- alignment
|
|
tools:
|
|
- hmmer:
|
|
description: Biosequence analysis using profile hidden Markov models
|
|
homepage: http://hmmer.org/
|
|
documentation: http://hmmer.org/documentation.html
|
|
tool_dev_url: None
|
|
doi: "http://dx.doi.org/10.1371/journal.pcbi.1002195"
|
|
licence: ["BSD-3-Clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- fasta:
|
|
type: file
|
|
description: Amino acid or nucleotide fasta file, gzipped or not
|
|
pattern: "*.{fna,fna.gz,faa,faa.gz,fasta,fasta.gz,fa,fa.gz}"
|
|
- hmm:
|
|
type: file
|
|
description: HMM file
|
|
pattern: "*.hmm"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- sthlm:
|
|
type: file
|
|
description: Multiple alignment in gzipped Stockholm format
|
|
pattern: "*.sthlm.gz"
|
|
|
|
authors:
|
|
- "@erikrikarddaniel"
|