mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
name: sratools_prefetch
|
|
description: Download sequencing data from the NCBI Sequence Read Archive (SRA).
|
|
keywords:
|
|
- sequencing
|
|
- fastq
|
|
- prefetch
|
|
tools:
|
|
- sratools:
|
|
description: SRA Toolkit and SDK from NCBI
|
|
homepage: https://github.com/ncbi/sra-tools
|
|
documentation: https://github.com/ncbi/sra-tools/wiki
|
|
tool_dev_url: https://github.com/ncbi/sra-tools
|
|
licence: ["US-Government-Work"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: >
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- id:
|
|
type: val
|
|
description: >
|
|
A string denoting an SRA id.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: >
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- sra:
|
|
type: directory
|
|
description: >
|
|
Directory containing the ETL data for the given SRA id.
|
|
pattern: "*/*.sra"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@Midnighter"
|