mirror of
https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.7 KiB
YAML
34 lines
1.7 KiB
YAML
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/versions.yml
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md5sum: 3da8f1c0de968886330a3f7a3a1c6616
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/versions.yml
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md5sum: 14ab12a71b0c2b87d8cd53639a991b3a
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/test.segmentation.table
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md5sum: f4643d9319bde4efbfbe516d6fb13052
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- path: output/gatk4/versions.yml
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md5sum: d2e61315de31f512e448f0cb4b77db54
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