mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
19 lines
819 B
YAML
19 lines
819 B
YAML
- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
|
|
command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config -c ./tests/modules/gatk4/fastqtosam/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/fastqtosam
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: db3fa4b463427b08e32a5d8264be59c1
|
|
|
|
- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
|
|
command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config -c ./tests/modules/gatk4/fastqtosam/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/fastqtosam
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: f4e35e46a29d8faebda5e852f9d0a132
|