mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
1d874bb0d0
* initial 'modules create' of minia * fixed tests * finished meta.yml * fixed filters.yml * resolved issues in pytest_software.yml * add newline * Update software/minia/main.nf * fixing a bunch of module tests * remove vscode * fixed minia * added rseqc/bamstat tests * added tests/meta.yml for rseqc/inferexperiment * added test/meta.yml for rseqc/inner_distances * added meta.yml and tests/main.nf for junctionannotation (test not running) * added test/meta.yml for rseqc/readdistribution * finished test/meta.yml for rseqc/readduplication * added entries to pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
61 lines
1.6 KiB
YAML
61 lines
1.6 KiB
YAML
name: rseqc_innerdistance
|
|
description: compare detected splice junctions to reference gene model
|
|
keywords:
|
|
- junctions
|
|
- splicing
|
|
- rnaseq
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: the alignment in bam format
|
|
pattern: "*.{bam}"
|
|
- bed:
|
|
type: file
|
|
description: a bed file for the reference gene model
|
|
pattern: "*.{bed}"
|
|
output:
|
|
- bed:
|
|
type: file
|
|
description: bed file of annotated junctions
|
|
pattern: "*.junction.bed"
|
|
- interact_bed:
|
|
type: file
|
|
description: Interact bed file
|
|
pattern: "*.Interact.bed"
|
|
- xls:
|
|
type: file
|
|
description: xls file with junction information
|
|
pattern: "*.xls"
|
|
- pdf:
|
|
type: file
|
|
description: junction plot
|
|
pattern: "*.junction.pdf"
|
|
- events_pdf:
|
|
type: file
|
|
description: events plot
|
|
pattern: "*.events.pdf"
|
|
- rscript:
|
|
type: file
|
|
description: Rscript to reproduce the plots
|
|
pattern: "*.r"
|
|
- log:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|