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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
33 lines
911 B
YAML
33 lines
911 B
YAML
name: pangolin
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description: Phylogenetic Assignment of Named Global Outbreak LINeages
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keywords:
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- covid
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- pangolin
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- lineage
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tools:
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- star:
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description: |
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Phylogenetic Assignment of Named Global Outbreak LINeages
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homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
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manual: https://github.com/cov-lineages/pangolin#pangolearn-description
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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- fasta:
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type: file
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description: |
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The genome assembly to be evaluated
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output:
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- report:
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type: file
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description: Pangolin lineage report
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pattern: "*.{csv}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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