mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: cnvpytor_partition
|
|
description: partitioning read depth histograms
|
|
keywords:
|
|
- cnv calling
|
|
- partition histograms
|
|
tools:
|
|
- cnvpytor:
|
|
description: calling CNVs using read depth
|
|
homepage: https://github.com/abyzovlab/CNVpytor
|
|
documentation: https://github.com/abyzovlab/CNVpytor
|
|
tool_dev_url: https://github.com/abyzovlab/CNVpytor
|
|
doi: "10.1101/2021.01.27.428472v1"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- pytor:
|
|
type: file
|
|
description: pytor file containing read depth data
|
|
pattern: "*.{pytor}"
|
|
- bin_sizes:
|
|
type: string
|
|
description: list of binsizes separated by space e.g. "1000 10000" and "1000"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- partitions:
|
|
type: file
|
|
description: pytor file containing partitions of read depth histograms using mean-shift method
|
|
pattern: "*.{pytor}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@sima-r"
|
|
- "@ramprasadn"
|