nf-core_modules/software
Jose Espinosa-Carrasco 0bbd7acfc4
Fix number of cpus for modules with piped tools (#499)
* Split CPUs for piped commands

* Fix tests, bams no md5 check
2021-05-18 09:52:00 +02:00
..
abacas Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
adapterremoval Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
allelecounter Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
artic Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bandage/image Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bbmap/bbduk Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bcftools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bedtools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bismark Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
blast Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
bowtie Fix number of cpus for modules with piped tools (#499) 2021-05-18 09:52:00 +02:00
bowtie2 Fix number of cpus for modules with piped tools (#499) 2021-05-18 09:52:00 +02:00
bwa Fix number of cpus for modules with piped tools (#499) 2021-05-18 09:52:00 +02:00
bwamem2 Fix number of cpus for modules with piped tools (#499) 2021-05-18 09:52:00 +02:00
bwameth Fix number of cpus for modules with piped tools (#499) 2021-05-18 09:52:00 +02:00
cat/fastq Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
cnvkit Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
cutadapt Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
deeptools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
dshbio Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
fastp Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
fastqc Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
fasttree Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
fgbio Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
flash Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
gatk4 Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
gffread Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
graphmap2 Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
gubbins Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
gunzip Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
hisat2 Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
hmmer/hmmalign Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
homer/annotatepeaks Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
iqtree Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
ivar Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
kallisto/index Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
kallistobustools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
kraken2/run Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
last/lastdb Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
lib Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
macs2/callpeak Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
mash/sketch Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
methyldackel Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
minia Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
minimap2 Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
mosdepth Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
msisensor Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
multiqc Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
nanolyse Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
nanoplot Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
nextclade Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
optitype Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
pangolin Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
phantompeakqualtools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
picard Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
plasmidid Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
preseq/lcextrap Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
prodigal Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
prokka Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
pycoqc Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
qcat Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
qualimap Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
quast Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
rapidnj Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
rasusa Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
raxmlng Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
rsem Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
rseqc Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
salmon Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
samtools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
seacr/callpeak Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
seqkit/split2 Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
seqtk/sample Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
sequenzautils Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
seqwish/induce Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
shovill Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
snpsites Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
sortmerna Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
spades Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
star Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
strelka/germline Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
stringtie Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
subread/featurecounts Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
tabix Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
tiddit/sv Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
trimgalore Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
ucsc Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
umitools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
unicycler Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
untar Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
vcftools Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
yara Update comments with new style (#497) 2021-05-12 14:56:46 +01:00