mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
73 lines
3 KiB
YAML
73 lines
3 KiB
YAML
- name: star align single-end
|
|
command: nextflow run ./tests/software/star/align -entry test_star_alignment_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- star
|
|
- star/align
|
|
files:
|
|
- path: output/star/star/Genome
|
|
md5sum: 323c992bac354f93073ce0fc43f222f8
|
|
- path: output/star/star/SA
|
|
md5sum: 3e70e4fc6d031e1915bb510727f2c559
|
|
- path: output/star/star/SAindex
|
|
md5sum: a94198b95a245d4f64af2a7133b6ec7b
|
|
- path: output/star/star/chrLength.txt
|
|
md5sum: f2bea3725fe1c01420c57fb73bdeb31a
|
|
- path: output/star/star/chrNameLength.txt
|
|
md5sum: c7ceb0a8827b2ea91c386933bee48742
|
|
- path: output/star/star/chrStart.txt
|
|
md5sum: faf5c55020c99eceeef3e34188ac0d2f
|
|
- path: output/star/star/exonGeTrInfo.tab
|
|
md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6
|
|
- path: output/star/star/exonInfo.tab
|
|
md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
|
|
- path: output/star/star/genomeParameters.txt
|
|
md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
|
|
- path: output/star/star/sjdbInfo.txt
|
|
md5sum: 1082ab459363b3f2f7aabcef0979c1ed
|
|
- path: output/star/star/sjdbList.fromGTF.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/star/star/sjdbList.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/star/star/transcriptInfo.tab
|
|
md5sum: 8fbe69abbbef4f89da3854873984dbac
|
|
- path: output/star/test.Aligned.out.bam
|
|
md5sum: b7f113f12ff62e09d16fa0ace290d03e
|
|
- path: output/star/test.SJ.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
|
|
- name: star align paired-end
|
|
command: nextflow run ./tests/software/star/align -entry test_star_alignment_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- star
|
|
- star/align
|
|
files:
|
|
- path: output/star/star/Genome
|
|
md5sum: 323c992bac354f93073ce0fc43f222f8
|
|
- path: output/star/star/SA
|
|
md5sum: 3e70e4fc6d031e1915bb510727f2c559
|
|
- path: output/star/star/SAindex
|
|
md5sum: a94198b95a245d4f64af2a7133b6ec7b
|
|
- path: output/star/star/chrLength.txt
|
|
md5sum: f2bea3725fe1c01420c57fb73bdeb31a
|
|
- path: output/star/star/chrNameLength.txt
|
|
md5sum: c7ceb0a8827b2ea91c386933bee48742
|
|
- path: output/star/star/chrStart.txt
|
|
md5sum: faf5c55020c99eceeef3e34188ac0d2f
|
|
- path: output/star/star/exonGeTrInfo.tab
|
|
md5sum: aec6e7a1ae3fc8c638ce5a9ce9c886b6
|
|
- path: output/star/star/exonInfo.tab
|
|
md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
|
|
- path: output/star/star/genomeParameters.txt
|
|
md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
|
|
- path: output/star/star/sjdbInfo.txt
|
|
md5sum: 1082ab459363b3f2f7aabcef0979c1ed
|
|
- path: output/star/star/sjdbList.fromGTF.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/star/star/sjdbList.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/star/star/transcriptInfo.tab
|
|
md5sum: 8fbe69abbbef4f89da3854873984dbac
|
|
- path: output/star/test.Aligned.out.bam
|
|
md5sum: a1f92e8dbeb954b6b8d3d7cc6b9814fb
|
|
- path: output/star/test.SJ.out.tab
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|