mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: bedtools_makewindows
|
|
|
|
description: Makes adjacent or sliding windows across a genome or BED file.
|
|
keywords:
|
|
- bed
|
|
- windows
|
|
tools:
|
|
- bedtools:
|
|
description: A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
homepage: https://bedtools.readthedocs.io
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/makewindows.html
|
|
tool_dev_url: None
|
|
doi: "10.1093/bioinformatics/btq033"
|
|
licence: ['MIT']
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- regions:
|
|
type: file
|
|
description: BED file OR Genome details file (<chromName><TAB><chromSize>)
|
|
pattern: "*.{bed,fai,tab}"
|
|
- use_bed:
|
|
type: boolean
|
|
description: true = input is a BED file; false = input is a genome details file
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tab:
|
|
type: file
|
|
description: Windows TAB file (BED or BED-like format)
|
|
pattern: "*.tab"
|
|
authors:
|
|
- "@kevbrick"
|