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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: artic_guppyplex
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description: Aggregates fastq files with demultiplexed reads
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keywords:
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- artic
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- aggregate
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- demultiplexed reads
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tools:
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- artic:
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description: ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
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homepage: https://artic.readthedocs.io/en/latest/
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documentation: https://artic.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/artic-network/fieldbioinformatics
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq_dir:
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type: directory
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description: Directory containing the fastq files with demultiplexed reads
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: Aggregated FastQ files
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pattern: "*.{fastq.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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