mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
name: bcftools_consensus
|
|
description: Compresses VCF files
|
|
keywords:
|
|
- variant calling
|
|
- consensus
|
|
- VCF
|
|
tools:
|
|
- consensus:
|
|
description: |
|
|
Create consensus sequence by applying VCF variants to a reference fasta file.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF file
|
|
pattern: "*.{vcf}"
|
|
- tbi:
|
|
type: file
|
|
description: tabix index file
|
|
pattern: "*.{tbi}"
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference file
|
|
pattern: "*.{fasta,fa}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference consensus file
|
|
pattern: "*.{fasta,fa}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|