mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-20 23:32:05 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: bedtools_subtract
|
|
description: Finds overlaps between two sets of regions (A and B), removes the overlaps from A and reports the remaining portion of A.
|
|
keywords:
|
|
- bed
|
|
- gff
|
|
- vcf
|
|
- subtract
|
|
tools:
|
|
- bedtools:
|
|
description: |
|
|
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/subtract.html
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- intervals1:
|
|
type: file
|
|
description: BED/GFF/VCF
|
|
pattern: "*.{bed|gff|vcf}"
|
|
- intervals2:
|
|
type: file
|
|
description: BED/GFF/VCF
|
|
pattern: "*.{bed|gff|vcf}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: File containing the difference between the two sets of features
|
|
patters: "*.bed"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
|
|
authors:
|
|
- "@sidorov-si"
|