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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
31 lines
830 B
YAML
31 lines
830 B
YAML
name: bwa_index
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description: Create BWA index for reference genome
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- bwa:
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description: |
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BWA is a software package for mapping DNA sequences against
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a large reference genome, such as the human genome.
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homepage: http://bio-bwa.sourceforge.net/
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documentation: http://www.htslib.org/doc/samtools.html
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arxiv: arXiv:1303.3997
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: file
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description: BWA genome index files
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pattern: "*.{amb,ann,bwt,pac,sa}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@drpatelh"
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- "@maxulysse"
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