nf-core_modules/modules/deeptools/plotfingerprint/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

61 lines
1.5 KiB
YAML

name: deeptools_plotfingerprint
description: plots cumulative reads coverages by BAM file
keywords:
- plot
- fingerprint
- cumulative coverage
- bam
tools:
- deeptools:
description: A set of user-friendly tools for normalization and visualization of deep-sequencing data
homepage:
documentation: https://deeptools.readthedocs.io/en/develop/index.html
tool_dev_url: https://github.com/deeptools/deepTools
doi: "10.1093/nar/gku365"
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- bam:
type: file
description: One or more BAM files
pattern: "*.{bam}"
- bais:
type: file
description: Corresponding BAM file indexes
pattern: "*.bam.bai"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pdf:
type: file
description: |
Output figure containing resulting plot
pattern: "*.{plotFingerprint.pdf}"
- matrix:
type: file
description: |
Output file summarizing the read counts per bin
pattern: "*.{plotFingerprint.raw.txt}"
- metrics:
type: file
description: |
file containing BAM file quality metrics
pattern: "*.{qcmetrics.txt}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@emiller88"
- "@drpatelh"
- "@joseespinosa"