mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
55 lines
1.4 KiB
YAML
55 lines
1.4 KiB
YAML
name: delly_call
|
|
description: Call structural variants
|
|
keywords:
|
|
- genome
|
|
- structural
|
|
- variants
|
|
- bcf
|
|
|
|
tools:
|
|
- delly:
|
|
description: Structural variant discovery by integrated paired-end and split-read analysis
|
|
homepage: https://github.com/dellytools/delly
|
|
documentation: https://github.com/dellytools/delly/blob/master/README.md
|
|
tool_dev_url: None
|
|
doi: "DOI:10.1093/bioinformatics/bts378"
|
|
licence: ["BSD-3-clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM file from alignment must be sorted, indexed, and duplicate marked
|
|
pattern: "*.{bam}"
|
|
- fasta:
|
|
type: file
|
|
description: The reference fasta file
|
|
- fai:
|
|
type: file
|
|
description: Index of reference fasta file to identify split-reads
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- bcf:
|
|
type: file
|
|
description: BCF format
|
|
pattern: "*.{bcf}"
|
|
- csi:
|
|
type: file
|
|
description: A generated csi index that matches the bcf output
|
|
pattern: "*.{bcf.csi}"
|
|
|
|
authors:
|
|
- "@projectoriented"
|