mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: hisat2_build
|
|
description: Builds HISAT2 index for reference genome
|
|
keywords:
|
|
- build
|
|
- index
|
|
- fasta
|
|
- genome
|
|
- reference
|
|
tools:
|
|
- hisat2:
|
|
description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
|
|
homepage: https://daehwankimlab.github.io/hisat2/
|
|
documentation: https://daehwankimlab.github.io/hisat2/manual/
|
|
doi: "10.1038/s41587-019-0201-4"
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: Reference fasta file
|
|
pattern: "*.{fa,fasta,fna}"
|
|
- gtf:
|
|
type: file
|
|
description: Reference gtf annotation file
|
|
pattern: "*.{gtf}"
|
|
- splicesites:
|
|
type: file
|
|
description: Splices sites in gtf file
|
|
pattern: "*.{txt}"
|
|
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- index:
|
|
type: file
|
|
description: HISAT2 genome index file
|
|
pattern: "*.ht2"
|
|
|
|
authors:
|
|
- "@ntoda03"
|