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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: msisensor_scan
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description: Scan a reference genome to get microsatellite & homopolymer information
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keywords:
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- homoploymer,microsatellite
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tools:
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- msisensor:
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description: MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
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homepage: https://github.com/ding-lab/msisensor
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documentation: None
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tool_dev_url: None
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doi: "10.1093/bioinformatics/btt755"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: FASTA file
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pattern: "*.{fa,fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- txt:
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type: file
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description: MSIsensor scan output file of homopolymers & minisatellites
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pattern: "*.msisensor_scan.txt"
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authors:
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- "@kevbrick"
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